IL_8OH6_151

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

8OH6|1|AS|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_151 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.0985

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OH6|1|AS|A|12
8OH6|1|AS|U|13
8OH6|1|AS|C|14
*
8OH6|1|AU|G|144
8OH6|1|AU|U|145

Current chains

Chain AS

25S (gene name XR_002086444.1)

Chain AU

5.8S

Nearby chains

Chain BC

60S ribosomal protein L8

Chain BI

60S ribosomal protein L15-A

Chain BS

60S ribosomal protein L25