IL_8OH6_175

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_175 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.0647

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8OH6|1|AS|C|754
8OH6|1|AS|U|755
8OH6|1|AS|G|756
8OH6|1|AS|A|757
8OH6|1|AS|U|758
8OH6|1|AS|G|759
*
8OH6|1|AS|C|764
8OH6|1|AS|G|765
8OH6|1|AS|G|766
8OH6|1|AS|A|767
8OH6|1|AS|U|768
8OH6|1|AS|G|769

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BG

60S ribosomal protein L13

Chain BV

60S ribosomal protein L28

Chain CJ

60S ribosomal protein L42-B