IL_8OH6_186

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

8OH6|1|AS|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_186 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.1236

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8OH6|1|AS|C|973
8OH6|1|AS|G|974
8OH6|1|AS|U|975
8OH6|1|AS|A|976
8OH6|1|AS|U|977
8OH6|1|AS|C|978
*
8OH6|1|AS|G|1097
8OH6|1|AS|A|1098
8OH6|1|AS|A|1099
8OH6|1|AS|G|1100

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BB

60S ribosomal protein L7-A

Chain BL

60S ribosomal protein L18-A

Chain BW

60S ribosomal protein L29