IL_8OH6_197

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_197 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.0693

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8OH6|1|AS|U|1119
8OH6|1|AS|U|1120
8OH6|1|AS|U|1121
*
8OH6|1|AS|A|1129
8OH6|1|AS|G|1130
8OH6|1|AS|A|1131

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AT

5S ribosomal RNA; 5S rRNA

Chain BE

60S ribosomal protein L10

Chain BO

60S ribosomal protein L21-A

Chain BW

60S ribosomal protein L29