IL_8OH6_233

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8OH6|1|AS|C|2175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_233 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0616

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8OH6|1|AS|C|2174
8OH6|1|AS|C|2175
8OH6|1|AS|A|2176
8OH6|1|AS|G|2177
*
8OH6|1|AS|C|2223
8OH6|1|AS|G|2224

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain CM

Small subunit ribosomal RNA; SSU rRNA