IL_8OH6_235

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_235 not in the Motif Atlas

Geometric match to IL_8C3A_091

Geometric discrepancy: 0.0975

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8OH6|1|AS|C|2182
8OH6|1|AS|U|2183
8OH6|1|AS|G|2184
*
8OH6|1|AS|C|2215
8OH6|1|AS|G|2216

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain CM

Small subunit ribosomal RNA; SSU rRNA