IL_8OH6_239

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_239 not in the Motif Atlas

Geometric match to IL_8C3A_094

Geometric discrepancy: 0.0857

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8OH6|1|AS|G|2254
8OH6|1|AS|C|2255
*
8OH6|1|AS|G|2285
8OH6|1|AS|C|2286
8OH6|1|AS|A|2287
8OH6|1|AS|U|2288

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain CI

60S ribosomal protein L41