IL_8OH6_255

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_255 not in the Motif Atlas

Homologous match to IL_8C3A_115

Geometric discrepancy: 0.0543

The information below is about IL_8C3A_115

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8OH6|1|AS|C|2848
8OH6|1|AS|G|2849
*
8OH6|1|AS|U|2921
8OH6|1|AS|G|2922
8OH6|1|AS|G|2923

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AX

60S ribosomal protein L3