IL_8OH6_263

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_263 not in the Motif Atlas

Homologous match to IL_8C3A_124

Geometric discrepancy: 0.0782

The information below is about IL_8C3A_124

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OH6|1|AS|A|2984
8OH6|1|AS|U|2985
8OH6|1|AS|U|2986
*
8OH6|1|AS|A|3012
8OH6|1|AS|U|3013
8OH6|1|AS|U|3014

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BQ

60S ribosomal protein L23-A