IL_8OH6_270
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GAU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8OH6|1|AS|A|3148
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_270 not in the Motif Atlas
- Homologous match to IL_8C3A_131
- Geometric discrepancy: 0.0766
- The information below is about IL_8C3A_131
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8OH6|1|AS|G|3147
8OH6|1|AS|A|3148
8OH6|1|AS|U|3149
*
8OH6|1|AS|A|3175
8OH6|1|AS|C|3176
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BA
- 60S ribosomal protein L6
- Chain BH
- 60S ribosomal protein L14-B
- Chain BJ
- Ribosomal protein L13
- Chain BN
- 60S ribosomal protein L20
- Chain CA
- 60S ribosomal protein L33-A
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