IL_8OH6_299

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

8OH6|1|B|C|114, 8OH6|1|B|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_299 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.0822

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OH6|1|B|U|113
8OH6|1|B|C|114
8OH6|1|B|G|115
8OH6|1|B|U|116
*
8OH6|1|B|A|298
8OH6|1|B|A|299

Current chains

Chain B

18S

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8

Chain N

40S ribosomal protein S11A