IL_8OH6_336
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8OH6|1|B|C|1081, 8OH6|1|B|U|1083, 8OH6|1|B|G|1085
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_336 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.0696
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|B|C|1019
8OH6|1|B|G|1020
8OH6|1|B|A|1021
*
8OH6|1|B|U|1080
8OH6|1|B|C|1081
8OH6|1|B|U|1082
8OH6|1|B|U|1083
8OH6|1|B|U|1084
8OH6|1|B|G|1085
8OH6|1|B|G|1086
Current chains
- Chain B
- 18S
Nearby chains
- Chain E
- Ribosomal protein S5
- Chain N
- 40S ribosomal protein S11A
- Chain P
- 40S ribosomal protein S13
- Chain Y
- 40S ribosomal protein S22-A
- Chain Z
- Ribosomal protein S23 (S12)
Coloring options: