IL_8OH6_405

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8OH6|1|CM|A|617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_405 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.0558

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8OH6|1|CM|G|614
8OH6|1|CM|U|615
8OH6|1|CM|U|616
8OH6|1|CM|A|617
8OH6|1|CM|A|618
8OH6|1|CM|A|619
8OH6|1|CM|A|620
*
8OH6|1|CM|U|1089
8OH6|1|CM|C|1090

Current chains

Chain CM

18S

Nearby chains

Chain DK

Ribosomal protein S23 (S12)

Chain DN

40S ribosomal protein S26