IL_8OH6_416

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

8OH6|1|CM|G|898

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_416 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.0644

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

8OH6|1|CM|U|878
8OH6|1|CM|U|879
8OH6|1|CM|G|880
8OH6|1|CM|U|881
8OH6|1|CM|C|882
8OH6|1|CM|A|883
8OH6|1|CM|G|884
*
8OH6|1|CM|C|895
8OH6|1|CM|U|896
8OH6|1|CM|U|897
8OH6|1|CM|G|898
8OH6|1|CM|G|899
8OH6|1|CM|A|900
8OH6|1|CM|U|901
8OH6|1|CM|U|902
8OH6|1|CM|U|903
8OH6|1|CM|A|904

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CO

40S ribosomal protein S1

Chain DB

40S ribosomal protein S14-A