IL_8OH6_423

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8OH6|1|CM|A|1618

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_423 not in the Motif Atlas

Homologous match to IL_8C3A_447

Geometric discrepancy: 0.0576

The information below is about IL_8C3A_447

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8OH6|1|CM|G|1131
8OH6|1|CM|A|1132
*
8OH6|1|CM|U|1617
8OH6|1|CM|A|1618
8OH6|1|CM|C|1619

Current chains

Chain CM

18S

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain CP

Ribosomal protein S5

Chain DN

40S ribosomal protein S26