IL_8OH6_449

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_449 not in the Motif Atlas

Homologous match to IL_8C3A_473

Geometric discrepancy: 0.0686

The information below is about IL_8C3A_473

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8OH6|1|CM|C|1631
8OH6|1|CM|G|1632
8OH6|1|CM|C|1633
8OH6|1|CM|U|1634
*
8OH6|1|CM|A|1740
8OH6|1|CM|A|1741
8OH6|1|CM|A|1742
8OH6|1|CM|A|1743
8OH6|1|CM|G|1744

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L41

Chain DK

Ribosomal protein S23 (S12)