IL_8OH6_454
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_454 not in the Motif Atlas
- Homologous match to IL_8C3A_478
- Geometric discrepancy: 0.052
- The information below is about IL_8C3A_478
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8OH6|1|CM|U|1656
8OH6|1|CM|G|1657
8OH6|1|CM|A|1658
8OH6|1|CM|G|1659
*
8OH6|1|CM|C|1716
8OH6|1|CM|A|1717
8OH6|1|CM|A|1718
8OH6|1|CM|A|1719
Current chains
- Chain CM
- 18S
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 60S ribosomal protein L23-A
- Chain BR
- 60S ribosomal protein L24-A
- Chain CT
- 40S ribosomal protein S6
- Chain CV
- 40S ribosomal protein S8
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