IL_8OHD_083
3D structure
- PDB id
- 8OHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAC*GAA
- Length
- 8 nucleotides
- Bulged bases
- 8OHD|1|5|A|2428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OHD_083 not in the Motif Atlas
- Geometric match to IL_7A0S_047
- Geometric discrepancy: 0.2354
- The information below is about IL_7A0S_047
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_06671.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
8OHD|1|5|U|2415
8OHD|1|5|G|2416
8OHD|1|5|A|2417
8OHD|1|5|A|2418
8OHD|1|5|C|2419
*
8OHD|1|5|G|2427
8OHD|1|5|A|2428
8OHD|1|5|A|2429
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- DDRGK domain-containing protein 1
- Chain LP
- 60S ribosomal protein L17
- Chain LR
- 60S ribosomal protein L19
- Chain Ll
- 60S ribosomal protein L39
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