IL_8OHD_094

3D structure

PDB id

8OHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8OHD|1|5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OHD_094 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.1709

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

8OHD|1|5|C|2704
8OHD|1|5|G|2705
*
8OHD|1|5|C|2710
8OHD|1|5|G|2711
8OHD|1|5|G|2712

Current chains

Chain 5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain LX

60S ribosomal protein L23a