IL_8OHD_173
3D structure
- PDB id
- 8OHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (native)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 8OHD|1|5|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OHD_173 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.0787
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8OHD|1|5|G|2847
8OHD|1|5|G|2848
8OHD|1|5|A|2849
8OHD|1|5|A|2850
8OHD|1|5|G|2851
8OHD|1|5|U|2852
8OHD|1|5|C|2853
8OHD|1|5|G|2854
8OHD|1|5|G|2855
*
8OHD|1|5|C|3837
8OHD|1|5|U|3838
8OHD|1|5|G|3839
8OHD|1|5|U|3840
8OHD|1|5|C|3841
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
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