IL_8OIP_006
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCCAG*CAAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIP_006 not in the Motif Atlas
- Geometric match to IL_5J7L_274
- Geometric discrepancy: 0.2159
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
8OIP|1|AA|U|81
8OIP|1|AA|C|82
8OIP|1|AA|C|83
8OIP|1|AA|A|84
8OIP|1|AA|G|85
*
8OIP|1|AA|C|97
8OIP|1|AA|A|98
8OIP|1|AA|A|99
8OIP|1|AA|A|100
8OIP|1|AA|A|101
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AM
- 28S ribosomal protein S16, mitochondrial
- Chain AN
- uS17m
- Chain AT
- Mitochondrial ribosomal protein S25
- Chain Aj
- Mitochondrial ribosomal protein S34
Coloring options: