IL_8OIP_013

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_013 not in the Motif Atlas

Geometric match to IL_5CCB_001

Geometric discrepancy: 0.1653

The information below is about IL_5CCB_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8OIP|1|AA|G|226
8OIP|1|AA|A|227
8OIP|1|AA|G|228
*
8OIP|1|AA|C|269
8OIP|1|AA|C|270
8OIP|1|AA|C|271

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AO

28S ribosomal protein S18b, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial isoform X2