IL_8OIP_016
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 8OIP|1|AA|A|293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIP_016 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.2096
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
8OIP|1|AA|C|290
8OIP|1|AA|G|291
8OIP|1|AA|U|292
8OIP|1|AA|A|293
8OIP|1|AA|A|294
8OIP|1|AA|A|295
8OIP|1|AA|G|296
*
8OIP|1|AA|C|484
8OIP|1|AA|G|485
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AD
- Aurora kinase A interacting protein 1
- Chain AJ
- Mitochondrial ribosomal protein S12
- Chain AN
- uS17m
- Chain AT
- Mitochondrial ribosomal protein S25
- Chain Ac
- Coiled-coil-helix-coiled-coil-helix domain containing 1
- Chain Ad
- 28S ribosomal protein S5, mitochondrial isoform X2
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