IL_8OIP_025

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUC*GAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_025 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3554

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8OIP|1|AA|U|558
8OIP|1|AA|U|559
8OIP|1|AA|C|560
*
8OIP|1|AA|G|710
8OIP|1|AA|A|711
8OIP|1|AA|A|712
8OIP|1|AA|A|713

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(fMet)

Chain Aa

Peptide chain release factor 1, mitochondrial