IL_8OIP_026

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCU*AG

Length

5 nucleotides

Bulged bases

8OIP|1|AA|C|609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_026 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.2136

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

8OIP|1|AA|C|608
8OIP|1|AA|C|609
8OIP|1|AA|U|610
*
8OIP|1|AA|A|693
8OIP|1|AA|G|694

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

Mitochondrial ribosomal protein S14

Chain AZ

Mitochondrial ribosomal protein S33

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial isoform X2