IL_8OIP_031
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAA*UAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIP_031 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2155
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
8OIP|1|AA|C|629
8OIP|1|AA|A|630
8OIP|1|AA|A|631
8OIP|1|AA|A|632
*
8OIP|1|AA|U|652
8OIP|1|AA|A|653
8OIP|1|AA|A|654
8OIP|1|AA|G|655
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AB
- 28S ribosomal protein S35, mitochondrial isoform 1
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain Ab
- Mitochondrial ribosomal protein S2
- Chain Ad
- 28S ribosomal protein S5, mitochondrial isoform X2
- Chain Ag
- uS9m
Coloring options: