IL_8OIP_035
3D structure
- PDB id
- 8OIP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- G(B8T)C(5MC)G*CGUAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8T, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIP_035 not in the Motif Atlas
- Homologous match to IL_4LFB_057
- Geometric discrepancy: 0.1457
- The information below is about IL_4LFB_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIP|1|AA|G|845
8OIP|1|AA|B8T|846
8OIP|1|AA|C|847
8OIP|1|AA|5MC|848
8OIP|1|AA|G|849
*
8OIP|1|AA|C|922
8OIP|1|AA|G|923
8OIP|1|AA|U|924
8OIP|1|AA|A|925
8OIP|1|AA|A|926
8OIP|1|AA|C|927
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AD
- Aurora kinase A interacting protein 1
- Chain AG
- P-site Met-tRNA(fMet)
- Chain AI
- mRNA
- Chain Aa
- Peptide chain release factor 1, mitochondrial
Coloring options: