IL_8OIP_036

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_036 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.1218

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OIP|1|AA|G|849
8OIP|1|AA|U|850
8OIP|1|AA|C|851
*
8OIP|1|AA|G|920
8OIP|1|AA|U|921
8OIP|1|AA|C|922

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AD

Aurora kinase A interacting protein 1

Chain AI

mRNA

Chain Aa

Peptide chain release factor 1, mitochondrial