IL_8OIP_051

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACCCA*UGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIP_051 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.3038

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8OIP|1|AA|G|414
8OIP|1|AA|A|415
8OIP|1|AA|C|416
8OIP|1|AA|C|417
8OIP|1|AA|C|418
8OIP|1|AA|A|419
*
8OIP|1|AA|U|443
8OIP|1|AA|G|444
8OIP|1|AA|C|445

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AQ

28S ribosomal protein S21, mitochondrial

Chain Ai

Mitochondrial ribosomal protein S11