IL_8OIP_052

3D structure

PDB id

8OIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGCCAAUUCAG*CUUAUG

Length

19 nucleotides

Bulged bases

8OIP|1|AA|C|599, 8OIP|1|AA|C|600, 8OIP|1|AA|U|604, 8OIP|1|AA|U|697, 8OIP|1|AA|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OIP|1|AA|C|595
8OIP|1|AA|U|596
8OIP|1|AA|U|597
8OIP|1|AA|G|598
8OIP|1|AA|C|599
8OIP|1|AA|C|600
8OIP|1|AA|A|601
8OIP|1|AA|A|602
8OIP|1|AA|U|603
8OIP|1|AA|U|604
8OIP|1|AA|C|605
8OIP|1|AA|A|606
8OIP|1|AA|G|607
*
8OIP|1|AA|C|695
8OIP|1|AA|U|696
8OIP|1|AA|U|697
8OIP|1|AA|A|698
8OIP|1|AA|U|699
8OIP|1|AA|G|700

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AK

Mitochondrial ribosomal protein S14

Chain AZ

Mitochondrial ribosomal protein S33

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain Ad

28S ribosomal protein S5, mitochondrial isoform X2

Chain Ae

mS39