IL_8OIQ_006

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CU*ACG

Length

5 nucleotides

Bulged bases

8OIQ|1|B8|C|104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_006 not in the Motif Atlas

Homologous match to IL_7A0S_002

Geometric discrepancy: 0.1821

The information below is about IL_7A0S_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8OIQ|1|B8|C|12
8OIQ|1|B8|U|13
*
8OIQ|1|B8|A|103
8OIQ|1|B8|C|104
8OIQ|1|B8|G|105

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BE

Mitochondrial ribosomal protein L28

Chain BF

Mitochondrial ribosomal protein L47

Chain BN

Mitochondrial ribosomal protein L4

Chain BY

Mitochondrial ribosomal protein L20

Chain Bt

mL44

Chain Bz

Mitochondrial ribosomal protein L51