IL_8OIQ_018

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

8OIQ|1|B8|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_018 not in the Motif Atlas

Geometric match to IL_5J7L_261

Geometric discrepancy: 0.1345

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8OIQ|1|B8|G|265
8OIQ|1|B8|C|266
*
8OIQ|1|B8|G|310
8OIQ|1|B8|A|311
8OIQ|1|B8|C|312

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

Mitochondrial ribosomal protein L2