IL_8OIQ_019

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_019 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1928

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

8OIQ|1|B8|C|285
8OIQ|1|B8|A|286
8OIQ|1|B8|U|287
8OIQ|1|B8|C|288
*
8OIQ|1|B8|G|303
8OIQ|1|B8|U|304
8OIQ|1|B8|G|305

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L34