IL_8OIQ_021
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUA*UAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: AUA,UAU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIQ_021 not in the Motif Atlas
- Homologous match to IL_7RQB_025
- Geometric discrepancy: 0.5644
- The information below is about IL_7RQB_025
- Detailed Annotation
- Intercalated cWW
- Broad Annotation
- Intercalated cWW
- Motif group
- IL_52767.4
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
8OIQ|1|B8|A|391
8OIQ|1|B8|U|392
8OIQ|1|B8|A|393
*
8OIQ|1|B8|U|418
8OIQ|1|B8|A|419
8OIQ|1|B8|U|420
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BG
- uL30m
- Chain Ba
- 39S ribosomal protein L52, mitochondrial
- Chain Be
- Mitochondrial ribosomal protein L57
- Chain Bx
- 39S ribosomal protein L49, mitochondrial
Coloring options: