IL_8OIQ_022
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCCCAAA*UCCAAUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIQ_022 not in the Motif Atlas
- Geometric match to IL_5XWG_002
- Geometric discrepancy: 0.3924
- The information below is about IL_5XWG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74768.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OIQ|1|B8|C|394
8OIQ|1|B8|C|395
8OIQ|1|B8|C|396
8OIQ|1|B8|C|397
8OIQ|1|B8|A|398
8OIQ|1|B8|A|399
8OIQ|1|B8|A|400
*
8OIQ|1|B8|U|411
8OIQ|1|B8|C|412
8OIQ|1|B8|C|413
8OIQ|1|B8|A|414
8OIQ|1|B8|A|415
8OIQ|1|B8|U|416
8OIQ|1|B8|G|417
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BD
- Mitochondrial ribosomal protein L27
- Chain BG
- uL30m
- Chain Ba
- 39S ribosomal protein L52, mitochondrial
- Chain Be
- Mitochondrial ribosomal protein L57
- Chain Bn
- Mitochondrial ribosomal protein L38
- Chain Bw
- 39S ribosomal protein L48, mitochondrial
Coloring options: