IL_8OIQ_026
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIQ_026 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1418
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8OIQ|1|B8|A|640
8OIQ|1|B8|U|641
8OIQ|1|B8|G|642
8OIQ|1|B8|A|643
8OIQ|1|B8|G|644
8OIQ|1|B8|U|645
8OIQ|1|B8|A|646
8OIQ|1|B8|A|647
*
8OIQ|1|B8|U|1006
8OIQ|1|B8|G|1007
8OIQ|1|B8|A|1008
8OIQ|1|B8|A|1009
8OIQ|1|B8|A|1010
8OIQ|1|B8|U|1011
8OIQ|1|B8|U|1012
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BA
- uL22m
- Chain BH
- Mitochondrial ribosomal protein L32
- Chain BN
- Mitochondrial ribosomal protein L4
- Chain BV
- bL17m
- Chain BY
- Mitochondrial ribosomal protein L20
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