IL_8OIQ_037

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UUAA

Length

6 nucleotides

Bulged bases

8OIQ|1|B8|U|895, 8OIQ|1|B8|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_037 not in the Motif Atlas

Homologous match to IL_5J7L_315

Geometric discrepancy: 0.1348

The information below is about IL_5J7L_315

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8OIQ|1|B8|U|884
8OIQ|1|B8|G|885
*
8OIQ|1|B8|U|894
8OIQ|1|B8|U|895
8OIQ|1|B8|A|896
8OIQ|1|B8|A|897

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BL

Mitochondrial ribosomal protein L2