IL_8OIQ_039

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

8OIQ|1|B8|U|960, 8OIQ|1|B8|A|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_039 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2147

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8OIQ|1|B8|G|928
8OIQ|1|B8|C|929
*
8OIQ|1|B8|G|959
8OIQ|1|B8|U|960
8OIQ|1|B8|A|961
8OIQ|1|B8|U|962

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(fMet)