IL_8OIQ_048

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_048 not in the Motif Atlas

Homologous match to IL_4WF9_083

Geometric discrepancy: 0.2093

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8OIQ|1|B8|A|1080
8OIQ|1|B8|U|1081
8OIQ|1|B8|U|1082
*
8OIQ|1|B8|A|1134
8OIQ|1|B8|C|1135
8OIQ|1|B8|U|1136

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BE

Mitochondrial ribosomal protein L28

Chain BO

Mitochondrial ribosomal protein L9