IL_8OIQ_055
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 8OIQ|1|B8|U|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIQ_055 not in the Motif Atlas
- Homologous match to IL_4WF9_092
- Geometric discrepancy: 0.2212
- The information below is about IL_4WF9_092
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
8OIQ|1|B8|A|1282
8OIQ|1|B8|U|1283
8OIQ|1|B8|C|1284
*
8OIQ|1|B8|G|1312
8OIQ|1|B8|G|1313
8OIQ|1|B8|U|1314
8OIQ|1|B8|U|1315
8OIQ|1|B8|U|1316
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain Aa
- Peptide chain release factor 1, mitochondrial
- Chain BP
- Mitochondrial ribosomal protein L10
- Chain BU
- uL16m
- Chain Be
- Mitochondrial ribosomal protein L57
Coloring options: