IL_8OIQ_059

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

8OIQ|1|B8|G|1399, 8OIQ|1|B8|A|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_059 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1663

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8OIQ|1|B8|A|1333
8OIQ|1|B8|U|1334
8OIQ|1|B8|C|1335
*
8OIQ|1|B8|G|1397
8OIQ|1|B8|U|1398
8OIQ|1|B8|G|1399
8OIQ|1|B8|A|1400
8OIQ|1|B8|U|1401

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BH

Mitochondrial ribosomal protein L32

Chain BM

ICT1