IL_8OIQ_062

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_062 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.1958

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8OIQ|1|B8|G|1411
8OIQ|1|B8|A|1412
8OIQ|1|B8|C|1413
*
8OIQ|1|B8|G|1427
8OIQ|1|B8|U|1428
8OIQ|1|B8|C|1429

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BL

Mitochondrial ribosomal protein L2

Chain Bu

Mitochondrial ribosomal protein L45