IL_8OIQ_063

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8OIQ|1|B8|A|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_063 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.366

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8OIQ|1|B8|C|1414
8OIQ|1|B8|G|1415
*
8OIQ|1|B8|C|1424
8OIQ|1|B8|A|1425
8OIQ|1|B8|G|1426

Current chains

Chain B8

16S rRNA

Nearby chains

Chain AG

P-site Met-tRNA(fMet)

Chain Aa

Peptide chain release factor 1, mitochondrial