IL_8OIQ_076

3D structure

PDB id

8OIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CUACG

Length

8 nucleotides

Bulged bases

8OIQ|1|B8|A|1395, 8OIQ|1|B8|C|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIQ_076 not in the Motif Atlas

Geometric match to IL_7VFT_001

Geometric discrepancy: 0.3077

The information below is about IL_7VFT_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8OIQ|1|B8|C|1335
8OIQ|1|B8|A|1336
8OIQ|1|B8|G|1337
*
8OIQ|1|B8|C|1393
8OIQ|1|B8|U|1394
8OIQ|1|B8|A|1395
8OIQ|1|B8|C|1396
8OIQ|1|B8|G|1397

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BM

ICT1

Chain BR

39S ribosomal protein L13, mitochondrial