IL_8OIT_005
3D structure
- PDB id
- 8OIT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAAGUAU*AGAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OIT_005 not in the Motif Atlas
- Geometric match to IL_4V9F_106
- Geometric discrepancy: 0.1458
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8OIT|1|B8|A|69
8OIT|1|B8|A|70
8OIT|1|B8|A|71
8OIT|1|B8|G|72
8OIT|1|B8|U|73
8OIT|1|B8|A|74
8OIT|1|B8|U|75
*
8OIT|1|B8|A|83
8OIT|1|B8|G|84
8OIT|1|B8|A|85
8OIT|1|B8|A|86
8OIT|1|B8|A|87
8OIT|1|B8|U|88
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BE
- 39S ribosomal protein L28, mitochondrial
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BO
- 39S ribosomal protein L9, mitochondrial
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain Bg
- Growth arrest and DNA damage-inducible proteins-interacting protein 1
- Chain Bz
- 39S ribosomal protein L51, mitochondrial
Coloring options: