IL_8OIT_011

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_011 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.1425

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OIT|1|B8|G|243
8OIT|1|B8|A|244
8OIT|1|B8|C|245
*
8OIT|1|B8|G|334
8OIT|1|B8|C|335
8OIT|1|B8|C|336

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

39S ribosomal protein L34, mitochondrial

Chain BN

39S ribosomal protein L4, mitochondrial