IL_8OIT_014

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_014 not in the Motif Atlas

Homologous match to IL_7RQB_022

Geometric discrepancy: 0.1303

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

8OIT|1|B8|C|278
8OIT|1|B8|G|279
8OIT|1|B8|U|280
8OIT|1|B8|C|281
*
8OIT|1|B8|G|296
8OIT|1|B8|U|297
8OIT|1|B8|G|298

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BJ

39S ribosomal protein L34, mitochondrial