IL_8OIT_037

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8OIT|1|B8|C|1048, 8OIT|1|B8|U|1430, 8OIT|1|B8|A|1431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_037 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1119

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OIT|1|B8|A|1047
8OIT|1|B8|C|1048
8OIT|1|B8|G|1049
*
8OIT|1|B8|C|1429
8OIT|1|B8|U|1430
8OIT|1|B8|A|1431
8OIT|1|B8|U|1432

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BA

39S ribosomal protein L22, mitochondrial

Chain BH

39S ribosomal protein L32, mitochondrial

Chain BM

39S ribosomal protein L3, mitochondrial