IL_8OIT_045

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_045 not in the Motif Atlas

Homologous match to IL_7RQB_092

Geometric discrepancy: 0.0967

The information below is about IL_7RQB_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

8OIT|1|B8|G|1271
8OIT|1|B8|C|1272
*
8OIT|1|B8|G|1313
8OIT|1|B8|A|1314
8OIT|1|B8|C|1315

Current chains

Chain B8

16S rRNA

Nearby chains

Chain BD

39S ribosomal protein L27, mitochondrial

Chain BM

39S ribosomal protein L3, mitochondrial

Chain BU

39S ribosomal protein L16, mitochondrial

Chain Be

Ribosomal protein 63, mitochondrial