IL_8OIT_049

3D structure

PDB id

8OIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OIT_049 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.2345

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8OIT|1|B8|U|1285
8OIT|1|B8|A|1286
8OIT|1|B8|G|1287
*
8OIT|1|B8|C|1297
8OIT|1|B8|A|1298

Current chains

Chain B8

16S rRNA

Nearby chains

Chain Aa

Peptide chain release factor 1, mitochondrial

Chain BU

39S ribosomal protein L16, mitochondrial

Chain Bl

39S ribosomal protein L36, mitochondrial